Links

Resources

Pubmed – comprises more than 25 million citations for biomedical literature from MEDLINE, life science journals, and online books.
CCP4
– software for macromolecular X-ray crystallography.
RCSB Protein Data Bank – provides information about the 3D shapes of proteins, nucleic acids, and complex assemblies.
EXPASY Bioinformatics Resource Portal – provides access to scientific databases and software tools in proteomics, genomics, phylogeny, systems biology, population genetics, transcriptomics etc.
PYMOL – program for looking at molecular structures and making publication quality pictures or movies.
DisulfideByDesigna web-based tool for disulfide engineering in proteins.

Collaboration

Slusher lab
Johns Hopkins Drug Discovery
Johns Hopkins School of Medicine
Baltimore, MD, USA
GCPII inhibitors in neuropathologies

Skerra lab
Lehrstuhl für Biologische Chemie
Technische Universität München
Freising, Germany
Development of Anticalin-based diagnostics

Pomper lab
Department of Radiology
Johns Hopkins Medical Institutions
Baltimore, MD, USA
GCPII ligands for cancer imaging

Berkman lab
Department of Chemistry
Washington State University
Pullman, WA, USA
Phosphorus-based inhibitors of GCPII

Konvalinka lab
Proteases of Human Pathogens
Institute of Organic Chem & Biochem
Prague, Czech Republic
Physiological functions of GCPII

Schutkowski lab
Post-translational Protein Modifications
Martin-Luther University Halle-Wittenberg
Halle, Germany
Substrate profiling of histone deacetylases

Grant support

Academy of Sciences of the Czech Republic:
PostDoc fellowship for Zsofia Kutil. 2016 – 2017

Grant Agency of the Czech Republic:
GA15-19640S Molecular basis of substrate recognition by histone deacetylase 6. 2015 – 2017.

Grant Agency of the Czech Republic:
GAP301/12/1513 Novel biologics for cancer imaging. 2012 – 2016.

Ministry of Education, Youth and Sports:
CZ.1.07/2.3.00/30.0045, Biotechnological expert in structural biology and gene expression, OP Education for Competitiveness. 2012 – 2015.

EMBO:
1978, Installation Grant. 2010 – 2015.

IRG Reintegration Grant:
249220, Design and development of novel reagents, tools, and techniques targeting human glutamate carboxypeptidases II and III, Marie Curie Actions – Seventh Research Framework Programme People. 2010 – 2014.

Academy of Sciences of the Czech Republic:
Fellowship Jana Evangelisty Purkyně. 2010 – 2014.

Ministry of Education, Youth and Sports:
ME10031 Structure-based design of ligands and inhibitors targeting glutamate carboxypeptidase II and its homologs. 2010 – 2012.

EMBO:
ASTF 56 – 2012, Short TermFellowship. 2012.